Apr 29, 2020 · It means you're out of disk space. The usage docs in our Wiki (https://github.com/ncbi/sra-tools/wiki/HowTo:-fasterq-dump) give some guidance ...
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Issues list ; 3.1.1 build failure on macOS and Linux. #937 opened last week ; vdb-config. #936 opened 3 weeks ago ; --fasta-unsorted causes fasterq-dump to quit ...
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The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
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Apr 20, 2018 · Hi, I'm trying to extract .bam files from SRA files downloaded from dbGAP. First off, thanks to whom ever provides the service and ...
Nov 22, 2020 · ncbi / sra-tools Public. Notifications · Fork ... GitHub account to open an issue ... I am trying to unpack some pacbio SRA files using fastq-dump ...
Apr 28, 2022 · I am using the ncbi/sra-tools docker image (thank you for providing it!) to run fasterq-dump on cloud delivered dbGap controlled access data.
Dec 7, 2020 · Hello, Thank you for developing this tool. I used v0.6.6 to download some SRA data before and it was fine. Now, I'm trying to download a ...
datasets Public. NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases. Jupyter Notebook 318 38 16 0 Updated 14 hours ...
test-sra: extended test-sra to debug user problems with https connections to NCBI test-sra: test-sra print amount of available disk space in user repositories
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The @NCBI Sequence Read Archive has no documentation for the SRA file format which is used to host its massive 31 Pb dataset. https://github.com/ncbi/sra-tools/ ...